ClowdControl

Team

@Greg K @Anisha K  @Andrew D @Lee T @Amanda E @Chris G

Mission

integrating cloud-deployable pipelines and deep-learning tools with the MindControl QC platform for accessible, reliable, and scalable deployment regardless of available/”captive” compute resources.

Url

Contact

Summary

ClowdControl extends the MindControl web-based image QC platform to enable deployment of pipelines on high-performance computing environments in the cloud. Leveraging tools packaged in Docker, built in Javascript and Python, and solutions for data storage and cloud computing such as Amazon Web Services, ClowdControl shortens the loop between proof-reading, editing, and reprocessing data without requiring further computational resources or know-how on behalf of the user. As this tool evolves, it will support data access and control through a variety of databases and authentication methods, and be able to extensibly interface with any Boutiques-documented pipeline on a variety of computational platforms, both in the cloud and locally.

Demo

  • MindControl in the Cloud (currently offline to save $)  

Hacking

Plan

  • Status: ✔️ 
  • Status: (there will always be more pipelines)
  • Status: ✔️
  • Status: ✔️
  • Status: ✔️ 
  • Status: (because it’ll never be done-done)
  • Status: ✔️ 

1. ABIDE Data

  • Available scripts:
  • Download ABIDE data for a list of subjects 
  • Download entire freesurfer directory, BIDS directory, or both from Amazon S3